Trio Assembly Snakemake Workflow

Overview

Trio Assembly Snakemake Workflow

Input

  • HiFi reads for child in bam format
  • Either HiFi or short reads for parents in either bam or cram format

Directory structure within basedir

.
├── cluster_logs
├── reads
│   ├── HG002
│   │   └── hifi
│   ├── HG003
│   │   ├── hifi
│   │   └── paired_end
│   ├── HG004
│   │   ├── hifi
│   │   └── paired_end
├── results
│   ├── HG002
│   │   ├── fasta
│   │   ├── hifiasm
│   │   ├── logs
│   │   └── yak
│   └── HG002_sr
│       ├── fasta
│       ├── hifiasm
│       ├── logs
│       └── yak
└── workflow_trio_assembly
    ├── calN50
    └── rules
        └── envs
Owner
Juniper A. Lake
Bioinformatics Scientist
Juniper A. Lake
PyCheckers - A classic board game implemented in pygame

PyCheckers! A classic board game implemented in pygame! Complete with every feature you need to play checkers! (including handsome sprites drawn by a

helaxious 1 Jan 21, 2022
BUBBLE SHOOT - Pygame (python)

BUBBLE-SHOOT---Pygame BUBBLE SHOOT - Pygame (python) Bubbleshooter This is a Bubble shooter Game made with pygame. The arrow is controlled by the arro

ROBIN JONEY 1 Nov 12, 2021
This is a python implementation of wordle, which uses the same set of available words as the hit game, Wordle

Wordle Game This is a python implementation of wordle, which uses the same set of available words as the hit game, Wordle. Play the game manually pyth

Pierre Theo Klein 11 Mar 04, 2022
A Higher-Lower web game made in Python using Flask framework.

Higher Lower Web Game Guess the random number from 0 to 9 in this web game made with Python and Flask Framework Modules that were used Random Flask In

Yago Goltara 1 Oct 27, 2021
To be easier to create backup files for the game StoneShard

StoneShard_save_backup_tool A tool to create backups and load them. Setup Configure the program by opening the "config.json" file. In this file you wi

Lucas V. Moog Brentano 6 Sep 15, 2022
Ultimaze est un jeu en 2.5D, réalisé dans le cadre d'un projet de NSI.

Ultimaze Ultimaze est un jeu en 2.5D, réalisé dans le cadre d'un projet de NSI. La consigne était d'utiliser la librairie pygame pour créer un jeu en

parlabarbedeMerlin 3 Sep 17, 2022
Brawl Stars open source server for v20

Laser Scratch Brawl Stars open source server for v20! Implemented Features Battle End Leaderboard Player Profile Lobby Info Menu Notifications Club Wa

TheIke 17 Nov 19, 2022
A Pygame Hangman Game coded in Python 3. Run Hangman.py in a terminal if you have Python 3

Hangman A Pygame Hangman Game coded in Python 3. Run python3 Hangman.py in a terminal if you have Python 3.

1 Dec 24, 2022
AWBW Replay Parser - a Python package to open and step through AWBW game replays.

AWBW Replay Parser This repository is home to the AWBW Replay Parser, a Python package to open and step through AWBW game replays. This project is una

Tarkan Al-Kazily 2 Feb 09, 2022
A Game Engine Made in Python with the Pygame Module

MandawEngine A Game Engine Made in Python with the Pygame Module Discord: https://discord.gg/MPPqj9PNt3 Installation To Get The Latest Version of Mand

Mandaw 14 Jun 24, 2022
A top-down arcade space shooter made in pygame.

About: Journey Through Space is a top-down arcade shooter made in pygame. You play as a pilot who was left behind after a battle and the goal is to go

Crimson Sane 0 Jan 01, 2022
Pyout - A little Krakout clone called Pyout written in Python 3

Pyout My little Krakout clone called Pyout written in Python 3

Jan Karger ツ ☀ 4 Feb 20, 2022
Cricket game using PYQT

Cricket-game-using-PYQT This is a Fantasy cricket Desktop application build in p

Sanket Mane 1 Jan 03, 2022
XPlaneROS is a ROS wrapper for the XPlane-11 flight simulator.

XPlaneROS XPlaneROS is a ROS wrapper for the XPlane-11 flight simulator. The wrapper provides functionality for extracting aircraft data from the simu

AirLab Stacks 26 Dec 04, 2022
A python snake game based on pygame.

PySnake A python snake game based on pygame. Requirements Package version pygame = 2.1.2 opencv-python = 4.5.1.48 Run Windows python main.py Linux &

2 Jan 31, 2022
I automated the lumberjack game on telegram, by recognising pixels and using pyautogui module

Lumberjack Automated: @gamebot According to the official documentation, @gamebot is a demo bot for the Telegram Gaming Platform.` It provides some sam

Yew Chong 1 Dec 07, 2021
Minecraft Script to Tellraw Datapack Generator

Minecraft Script to Tellraw Datapack Geneator (STDG) can generate a chain of tellraw command in datapack from script.

1 Jan 28, 2022
Crazy fast kahoot game flooder with a GUI and multi OS support.

kahoot flooder Crazy fast kahoot game flooder with a GUI and multi OS support. Made in python using tkinter and KahootPY with toast notifications. Req

Ben Tettmar 1 Apr 09, 2022
Minecraft-Bedrock-Modpack-Maker - Simple tool to combine multiple addons into one. Not finished

Minecraft-Bedrock-Modpack-Maker Simple tool to combine multiple addons into one. Not finished! Any contributing is welcome. How to use: Move all .mcpa

MivianCoin 1 Jan 06, 2022
中文版本的ai地牢,一个使用GPT-2的文字冒险游戏,使用清源CPM预训练模型finetune而成。

中文版本的ai地牢,一个使用GPT-2的文字冒险游戏,使用清源CPM预训练模型finetune而成。

icybee 178 Jan 03, 2023