This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data arXiv This is the code base for weakly supervised NER. We provide a

Tools for curating biomedical training data for large-scale language modeling

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

farabio is a minimal PyTorch toolkit for out-of-the-box deep learning support in biomedical imaging. For further information, see Wikis and Docs.