MISSFormer: An Effective Medical Image Segmentation Transformer

Overview

MISSFormer

Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_address.

1. Environment

  • Please prepare an environment with Ubuntu 20.04, with Python 3.6.13, PyTorch 1.8.0, and CUDA 11.1.1.

2. Train/Test

  • Train
python train.py --dataset Synapse --root_path your DATA_DIR --max_epochs 400 --output_dir your OUT_DIR  --img_size 224 --base_lr 0.05 --batch_size 24
  • Test
python test.py --dataset Synapse --is_savenii --volume_path your DATA_DIR --output_dir your OUT_DIR --max_epoch 400 --base_lr 0.05 --img_size 224 --batch_size 24

References

@article{huang2021missformer,
  title={MISSFormer: An Effective Medical Image Segmentation Transformer},
  author={Huang, Xiaohong and Deng, Zhifang and Li, Dandan and Yuan, Xueguang},
  journal={arXiv preprint arXiv:2109.07162},
  year={2021}
}
Owner
Fong
Fong
This is a GUI interface which can process forest fire detection, smoke detection and fire segmentation

This is a GUI interface which can process forest fire detection, smoke detection and fire segmentation. Yolov5 is used to detect fire and smoke and unet is used to segment fire.

7 Jan 08, 2023
Scenarios, tutorials and demos for Autonomous Driving

The Autonomous Driving Cookbook (Preview) NOTE: This project is developed and being maintained by Project Road Runner at Microsoft Garage. This is cur

Microsoft 2.1k Jan 02, 2023
A framework that allows people to write their own Rocket League bots.

YOU PROBABLY SHOULDN'T PULL THIS REPO Bot Makers Read This! If you just want to make a bot, you don't need to be here. Instead, start with one of thes

543 Dec 20, 2022
Official repository for the CVPR 2021 paper "Learning Feature Aggregation for Deep 3D Morphable Models"

Deep3DMM Official repository for the CVPR 2021 paper Learning Feature Aggregation for Deep 3D Morphable Models. Requirements This code is tested on Py

38 Dec 27, 2022
Let's create a tool to convert Thailand budget from PDF to CSV.

thailand-budget-pdf2csv Let's create a tool to convert Thailand Government Budgeting from PDF to CSV! รวมพลัง Dev แปลงงบ จาก PDF สู่ Machine-readable

Kao.Geek 88 Dec 19, 2022
Active learning for Mask R-CNN in Detectron2

MaskAL - Active learning for Mask R-CNN in Detectron2 Summary MaskAL is an active learning framework that automatically selects the most-informative i

49 Dec 20, 2022
Semantic segmentation task for ADE20k & cityscapse dataset, based on several models.

semantic-segmentation-tensorflow This is a Tensorflow implementation of semantic segmentation models on MIT ADE20K scene parsing dataset and Cityscape

HsuanKung Yang 83 Oct 13, 2022
Аналитика доходности инвестиционного портфеля в Тинькофф брокере

Аналитика доходности инвестиционного портфеля Тиньков Видео на YouTube Для работы скрипта нужно установить три переменных окружения: export TINKOFF_TO

Alexey Goloburdin 64 Dec 17, 2022
Framework for evaluating ANNS algorithms on billion scale datasets.

Billion-Scale ANN http://big-ann-benchmarks.com/ Install The only prerequisite is Python (tested with 3.6) and Docker. Works with newer versions of Py

Harsha Vardhan Simhadri 132 Dec 24, 2022
deep learning model with only python and numpy with test accuracy 99 % on mnist dataset and different optimization choices

deep_nn_model_with_only_python_100%_test_accuracy deep learning model with only python and numpy with test accuracy 99 % on mnist dataset and differen

0 Aug 28, 2022
SpanNER: Named EntityRe-/Recognition as Span Prediction

SpanNER: Named EntityRe-/Recognition as Span Prediction Overview | Demo | Installation | Preprocessing | Prepare Models | Running | System Combination

NeuLab 104 Dec 17, 2022
Streaming over lightweight data transformations

Description Data augmentation libarary for Deep Learning, which supports images, segmentation masks, labels and keypoints. Furthermore, SOLT is fast a

Research Unit of Medical Imaging, Physics and Technology 256 Jan 08, 2023
Code for paper "Which Training Methods for GANs do actually Converge? (ICML 2018)"

GAN stability This repository contains the experiments in the supplementary material for the paper Which Training Methods for GANs do actually Converg

Lars Mescheder 885 Jan 01, 2023
Jremesh-tools - Blender addon for quad remeshing

JRemesh Tools Blender 2.8 - 3.x addon for quad remeshing. Currently it is a wrap

Jayanam 89 Dec 30, 2022
This is our ARTS test set, an enriched test set to probe Aspect Robustness of ABSA.

This is the repository for our 2020 paper "Tasty Burgers, Soggy Fries: Probing Aspect Robustness in Aspect-Based Sentiment Analysis". Data We provide

35 Nov 16, 2022
Reading list for research topics in Masked Image Modeling

awesome-MIM Reading list for research topics in Masked Image Modeling(MIM). We list the most popular methods for MIM, if I missed something, please su

ligang 231 Dec 07, 2022
Forecasting Nonverbal Social Signals during Dyadic Interactions with Generative Adversarial Neural Networks

ForecastingNonverbalSignals This is the implementation for the paper Forecasting Nonverbal Social Signals during Dyadic Interactions with Generative A

1 Feb 10, 2022
A highly efficient and modular implementation of Gaussian Processes in PyTorch

GPyTorch GPyTorch is a Gaussian process library implemented using PyTorch. GPyTorch is designed for creating scalable, flexible, and modular Gaussian

3k Jan 02, 2023
GCNet: Non-local Networks Meet Squeeze-Excitation Networks and Beyond

GCNet for Object Detection By Yue Cao, Jiarui Xu, Stephen Lin, Fangyun Wei, Han Hu. This repo is a official implementation of "GCNet: Non-local Networ

Jerry Jiarui XU 1.1k Dec 29, 2022
PyTorch implementation of Asymmetric Siamese (https://arxiv.org/abs/2204.00613)

Asym-Siam: On the Importance of Asymmetry for Siamese Representation Learning This is a PyTorch implementation of the Asym-Siam paper, CVPR 2022: @inp

Meta Research 89 Dec 18, 2022