Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Related tags

Algorithmsssa
Overview

SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f 

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

Owner
Anoop Lab
The major focus of our research group the study of early events using computational chemistry, and developing methods for this study.
Anoop Lab
Implemented page rank program

Page Rank Implemented page rank program based on fact that a website is more important if it is linked to by other important websites using recursive

Vaibhaw 6 Aug 24, 2022
A library for benchmarking, developing and deploying deep learning anomaly detection algorithms

A library for benchmarking, developing and deploying deep learning anomaly detection algorithms Key Features • Getting Started • Docs • License Introd

OpenVINO Toolkit 1.5k Jan 04, 2023
FPE - Format Preserving Encryption with FF3 in Python

ff3 - Format Preserving Encryption in Python An implementation of the NIST approved FF3 and FF3-1 Format Preserving Encryption (FPE) algorithms in Pyt

Privacy Logistics 42 Dec 16, 2022
:computer: Data Structures and Algorithms in Python

Algorithms in Python Implementations of a few algorithms and datastructures for fun and profit! Completed Karatsuba Multiplication Basic Sorting Rabin

Prakhar Srivastav 2.9k Jan 01, 2023
Policy Gradient Algorithms (One Step Actor Critic & PPO) from scratch using Numpy

Policy Gradient Algorithms From Scratch (NumPy) This repository showcases two policy gradient algorithms (One Step Actor Critic and Proximal Policy Op

1 Jan 17, 2022
Algorithms and data structures for educational, demonstrational and experimental purposes.

Algorithms and Data Structures (ands) Introduction This project was created for personal use mostly while studying for an exam (starting in the month

50 Dec 06, 2022
TikTok X-Gorgon & X-Khronos Generation Algorithm

TikTok X-Gorgon & X-Khronos Generation Algorithm X-Gorgon and X-Khronos headers are required to call tiktok api. I will provide you API as rental or s

TikTokMate 31 Dec 01, 2022
A priority of preferences for teacher assignment problem

Genetic-Algorithm-for-Assignment-Problem A priority of preferences for teacher assignment problem Keywords k-partition; clustering; education 4.0 Abst

hades 2 Oct 31, 2022
Robotic Path Planner for a 2D Sphere World

Robotic Path Planner for a 2D Sphere World This repository contains code implementing a robotic path planner in a 2D sphere world with obstacles. The

Matthew Miceli 1 Nov 19, 2021
Genetic Algorithm for Robby Robot based on Complexity a Guided Tour by Melanie Mitchell

Robby Robot Genetic Algorithm A Genetic Algorithm based Robby the Robot in Chapter 9 of Melanie Mitchell's book Complexity: A Guided Tour Description

Matthew 2 Dec 01, 2022
BCI datasets and algorithms

Brainda Welcome! First and foremost, Welcome! Thank you for visiting the Brainda repository which was initially released at this repo and reorganized

52 Jan 04, 2023
Tic-tac-toe with minmax algorithm.

Tic-tac-toe Tic-tac-toe game with minmax algorithm which is a research algorithm his objective is to find the best move to play by going through all t

5 Jan 27, 2022
Pathfinding algorithm based on A*

Pathfinding V1 What is pathfindingV1 ? This program is my very first path finding program, using python and turtle for graphic rendering. How is it wo

Yan'D 6 May 26, 2022
Implements (high-dimenstional) clustering algorithm

Description Implements (high-dimenstional) clustering algorithm described in https://arxiv.org/pdf/1804.02624.pdf Dependencies python3 pytorch (=0.4)

Eric Elmoznino 5 Dec 27, 2022
Algorithms and utilities for SAR sensors

WARNING: THIS CODE IS NOT READY FOR USE Sarsen Algorithms and utilities for SAR sensors Objectives Be faster and simpler than ESA SNAP and cloud nativ

B-Open 201 Dec 27, 2022
frePPLe - open source supply chain planning

frePPLe Open source supply chain planning FrePPLe is an easy-to-use and easy-to-implement open source advanced planning and scheduling tool for manufa

frePPLe 385 Jan 06, 2023
Path tracing obj - (taichi course final project) a path tracing renderer that can import and render obj files

Path tracing obj - (taichi course final project) a path tracing renderer that can import and render obj files

5 Sep 10, 2022
iAWE is a wonderful dataset for those of us who work on Non-Intrusive Load Monitoring (NILM) algorithms.

iAWE is a wonderful dataset for those of us who work on Non-Intrusive Load Monitoring (NILM) algorithms. You can find its main page and description via this link. If you are familiar with NILM-TK API

Mozaffar Etezadifar 3 Mar 19, 2022
This is a Python implementation of the HMRF algorithm on networks with categorial variables.

Salad Salad is an Open Source Python library to segment tissues into different biologically relevant regions based on Hidden Markov Random Fields. The

1 Nov 16, 2021
This repository is not maintained

This repository is no longer maintained, but is being kept around for educational purposes. If you want a more complete algorithms repo check out: htt

Nic Young 2.8k Dec 30, 2022