Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capability)

Related tags

Deep Learningdeep-learningproteinstransformersartificial-intelligenceeditingattention-mechanismautoregressiveinfilling
Overview

Protein GLM (wip)

Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capability). It will also make use of a super-conditioning technique as outlined here.

The Transformers model will employ every state of the art improvement currently known.

Citations

@inproceedings{Du2021GLMGL,
  title   = {GLM: General Language Model Pretraining with Autoregressive Blank Infilling},
  author  = {Zhengxiao Du and Yujie Qian and Xiao Liu and Ming Ding and Jiezhong Qiu and Zhilin Yang and Jie Tang},
  year    = {2021}
}
You might also like...
Pytorch implementation of "MOSNet: Deep Learning based Objective Assessment for Voice Conversion"

MOSNet pytorch implementation of "MOSNet: Deep Learning based Objective Assessment for Voice Conversion" https://arxiv.org/abs/1904.08352 Dependency L

null 9 Nov 18, 2022
Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling
Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling

Parallel Tacotron2 Pytorch Implementation of Google's Parallel Tacotron 2: A Non-Autoregressive Neural TTS Model with Differentiable Duration Modeling

Keon Lee 170 Dec 27, 2022
The official implementation of VAENAR-TTS, a VAE based non-autoregressive TTS model.

VAENAR-TTS This repo contains code accompanying the paper "VAENAR-TTS: Variational Auto-Encoder based Non-AutoRegressive Text-to-Speech Synthesis". Sa

THUHCSI 138 Oct 28, 2022
MEND: Model Editing Networks using Gradient Decomposition

MEND: Model Editing Networks using Gradient Decomposition Setup Environment This codebase uses Python 3.7.9. Other versions may work as well. Create a

Eric Mitchell 141 Dec 2, 2022
Core ML tools contain supporting tools for Core ML model conversion, editing, and validation.

Core ML Tools Use coremltools to convert machine learning models from third-party libraries to the Core ML format. The Python package contains the sup

Apple 3k Jan 8, 2023
Official codebase for running the small, filtered-data GLIDE model from GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models.

GLIDE This is the official codebase for running the small, filtered-data GLIDE model from GLIDE: Towards Photorealistic Image Generation and Editing w

OpenAI 2.9k Jan 4, 2023
Generative Models for Graph-Based Protein Design
Generative Models for Graph-Based Protein Design

Graph-Based Protein Design This repo contains code for Generative Models for Graph-Based Protein Design by John Ingraham, Vikas Garg, Regina Barzilay

John Ingraham 159 Dec 15, 2022
7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle

kaggle-hpa-2021-7th-place-solution Code for 7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle. A description of the met

null 8 Jul 9, 2021
Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Tristan Croll 24 Nov 23, 2022
Releases(0.0.2a)
Owner
Phil Wang
Working with Attention. It's all we need
Phil Wang
GitHub Repository
RAANet: Range-Aware Attention Network for LiDAR-based 3D Object Detection with Auxiliary Density Level Estimation

RAANet: Range-Aware Attention Network for LiDAR-based 3D Object Detection with Auxiliary Density Level Estimation Anonymous submission Abstract 3D obj

30 Sep 16, 2022
(CVPR 2022) A minimalistic mapless end-to-end stack for joint perception, prediction, planning and control for self driving.

LAV Learning from All Vehicles Dian Chen, Philipp Krähenbühl CVPR 2022 (also arXiV 2203.11934) This repo contains code for paper Learning from all veh

Dian Chen 300 Dec 15, 2022
VGGFace2-HQ - A high resolution face dataset for face editing purpose

The first open source high resolution dataset for face swapping!!! A high resolution version of VGGFace2 for academic face editing purpose

Naiyuan Liu 232 Dec 29, 2022
🤗 Paper Style Guide

🤗 Paper Style Guide (Work in progress, send a PR!) Libraries to Know booktabs natbib cleveref Either seaborn, plotly or altair for graphs algorithmic

Hugging Face 66 Dec 12, 2022
Tensorflow Tutorials using Jupyter Notebook

Tensorflow Tutorials using Jupyter Notebook TensorFlow tutorials written in Python (of course) with Jupyter Notebook. Tried to explain as kindly as po

Sungjoon 2.6k Dec 22, 2022
The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting".

IGMTF The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting". Requirements The framework

Wentao Xu 24 Dec 05, 2022
Data pipelines for both TensorFlow and PyTorch!

rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets

1 Dec 08, 2021
Official Code for ICML 2021 paper "Revisiting Point Cloud Shape Classification with a Simple and Effective Baseline"

Revisiting Point Cloud Shape Classification with a Simple and Effective Baseline Ankit Goyal, Hei Law, Bowei Liu, Alejandro Newell, Jia Deng Internati

Princeton Vision & Learning Lab 115 Jan 04, 2023
Erpnext app for make employee salary on payroll entry based on one or more project with percentage for all project equal 100 %

Project Payroll this app for make payroll for employee based on projects like project on 30 % and project 2 70 % as account dimension it makes genral

Ibrahim Morghim 8 Jan 02, 2023
Iowa Project - My second project done at General Assembly, focused on feature engineering and understanding Linear Regression as a concept

Project 2 - Ames Housing Data and Kaggle Challenge PROBLEM STATEMENT Inferring or Predicting? What's more valuable for a housing model? When creating

Adam Muhammad Klesc 1 Jan 03, 2022
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.

============================================================================================================ `MILA will stop developing Theano https:

9.6k Dec 31, 2022
The Self-Supervised Learner can be used to train a classifier with fewer labeled examples needed using self-supervised learning.

Published by SpaceML • About SpaceML • Quick Colab Example Self-Supervised Learner The Self-Supervised Learner can be used to train a classifier with

SpaceML 92 Nov 30, 2022
:boar: :bear: Deep Learning based Python Library for Stock Market Prediction and Modelling

bulbea "Deep Learning based Python Library for Stock Market Prediction and Modelling." Table of Contents Installation Usage Documentation Dependencies

Achilles Rasquinha 1.8k Jan 05, 2023
Training PSPNet in Tensorflow. Reproduce the performance from the paper.

Training Reproduce of PSPNet. (Updated 2021/04/09. Authors of PSPNet have provided a Pytorch implementation for PSPNet and their new work with support

Li Xuhong 126 Jul 13, 2022
A plug-and-play library for neural networks written in Python

A plug-and-play library for neural networks written in Python!

Dimos Michailidis 2 Jul 16, 2022
Implementation of ToeplitzLDA for spatiotemporal stationary time series data.

Code for the ToeplitzLDA classifier proposed in here. The classifier conforms sklearn and can be used as a drop-in replacement for other LDA classifiers. For in-depth usage refer to the learning from

Jan Sosulski 5 Nov 07, 2022
The official implementation of CSG-Stump: A Learning Friendly CSG-Like Representation for Interpretable Shape Parsing

CSGStumpNet The official implementation of CSG-Stump: A Learning Friendly CSG-Like Representation for Interpretable Shape Parsing Paper | Project page

Daxuan 39 Dec 26, 2022
High-quality single file implementation of Deep Reinforcement Learning algorithms with research-friendly features

CleanRL (Clean Implementation of RL Algorithms) CleanRL is a Deep Reinforcement Learning library that provides high-quality single-file implementation

Costa Huang 1.8k Jan 01, 2023
Official implementation of "Variable-Rate Deep Image Compression through Spatially-Adaptive Feature Transform", ICCV 2021

Variable-Rate Deep Image Compression through Spatially-Adaptive Feature Transform This repository is the implementation of "Variable-Rate Deep Image C

Myungseo Song 47 Dec 13, 2022
PyToch implementation of A Novel Self-supervised Learning Task Designed for Anomaly Segmentation

Self-Supervised Anomaly Segmentation Intorduction This is a PyToch implementation of A Novel Self-supervised Learning Task Designed for Anomaly Segmen

WuFan 2 Jan 27, 2022