Snakemake workflow for converting FASTQ files to self-contained CRAM files with maximum lossless compression.

Last update: Dec 16, 2021

Related tags

Data Analysis ngs-fastq-to-cram

Overview

Snakemake workflow:

A Snakemake workflow for

Usage

The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) sitory and its DOI (see above).

TODO

Replace and everywhere in the template (also under .github/workflows) with the correct name and owning user or organization.
Replace with the workflow name (can be the same as ).
Replace with a description of what the workflow does.
The workflow will occur in the snakemake-workflow-catalog once it has been made public. Then the link under "Usage" will point to the usage instructions if and were correctly set.

Owner

Algorithms for reproducible bioinformatics (Koesterlab)

The research group of Johannes Köster

GitHub Repository

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