MLops review
MLops tools review focused on execution using multiple cluster types: slurm, kubernetes, dask...
Examples so far:
- Ploomber pipelines - able to run on Slurm, K8s, Airflow, Kubeflow(in progress)
- Kubernetes - example runs pipeline on local k8s using argo
- Slurm - example transforms pipeline using a script into batch jobs
For example, since we want the tasks to run in the conda environment we created, edit the template.sh so it looks like this:
#!/bin/bash
#SBATCH --job-name={{name}}
#SBATCH --output=result.out
#
# activate myenv
conda activate myenv
srun {{command}}
- Nextflow