Single machine, multiple cards training; mix-precision training; DALI data loader.

Overview

Template

Script Category Description

Category script
comparison script train.py, loader.py
for single-machine-multiple-cards training train_DP.py, train_DDP.py
for mixed-precision training train_amp.py
for DALI data loading loader_DALI.py

Note: The comment # new # in script represents newly added code block (compare to comparison script, e.g., train.py)

Environment

  • CPU: Intel(R) Xeon(R) Gold 5118 CPU @ 2.30GHz
  • GPU: RTX 2080Ti
  • OS: Ubuntu 18.04.3 LTS
  • DL framework: Pytorch 1.6.0, Torchvision 0.7.0

Single-machine-multiple-cards training (two cards for example)

train_DP.py -- Parallel computing using nn.DataParallel

Usage:

cd Template/src
python train_DP.py

Superiority:
- Easy to use
- Accelerate training (inconspicuous)
Weakness:
- Unbalanced load
Description:
DataParallel is very convenient to use, we just need to use DataParallel to package the model:

model = ...
model = nn.DataParallel(model)

train_DDP.py -- Parallel computing using torch.distributed

Usage:

cd Template/src
CUDA_VISIBLE_DEVICES=0,1 python -m torch.distributed.launch --nproc_per_node=2 train_DDP.py

Superiority:
- balanced load
- Accelerate training (conspicuous)
Weakness:
- Hard to use
Description:
Unlike DataParallel who control multiple GPUs via single-process, distributed creates multiple process. we just need to accomplish one code and torch will automatically assign it to n processes, each running on corresponding GPU.
To config distributed model via torch.distributed, the following steps needed to be performed:

  1. Get current process index:
parser = argparse.ArgumentParser()
parser.add_argument('--local_rank', default=-1, type=int, help='node rank for distributed training')
opt = parser.parse_args()
# print(opt.local_rank)
  1. Set the backend and port used for communication between GPUs:
dist.init_process_group(backend='nccl')
  1. Config current device according to the local_rank:
torch.cuda.set_device(opt.local_rank)
  1. Config data sampler:
dataset = ...
sampler = distributed.DistributedSampler(dataset)
dataloader = DataLoader(dataset=dataset, ..., sampler=sampler)
  1. Package the model:
model = ...
model = nn.SyncBatchNorm.convert_sync_batchnorm(model)
model = nn.parallel.DistributedDataParallel(model.cuda(), device_ids=[opt.local_rank])

Mixed-precision training

train_amp.py -- Mixed-precision training using torch.cuda.amp

Usage:

cd Template/src
python train_amp.py

Superiority:
- Easy to use
- Accelerate training (conspicuous for heavy model)
Weakness:
- Accelerate training (inconspicuous for light model)
Description:
Mixed-precision training is a set of techniques that allows us to use fp16 without causing our model training to diverge.
To config mixed-precision training via torch.cuda.amp, the following steps needed to be performed:

  1. Instantiate GradScaler object:
scaler = torch.cuda.amp.GradScaler()
  1. Modify the traditional optimization process:
# Before:
optimizer.zero_grad()
preds = model(imgs)
loss = loss_func(preds, labels)
loss.backward()
optimizer.step()

# After:
optimizer.zero_grad()
with torch.cuda.amp.autocast():
    preds = model(imgs)
    loss = loss_func(preds, labels)
scaler.scale(loss).backward()
scaler.step(optimizer)
scaler.update()

DALI data loading

loader_DALI.py -- Data loading using nvidia.dali

Prerequisite:
- NVIDIA Driver supporting CUDA 10.0 or later (i.e., 410.48 or later driver releases)
- PyTorch 0.4 or later
- Data organization format that matches the code, the format that matches the loader_DALI.py is as follows:
 /dataset / train or test / img or gt / sub_dirs / imgs [View]
Usage:

pip install --extra-index-url https://developer.download.nvidia.com/compute/redist --upgrade nvidia-dali-cuda102
cd Template/src
python loader_DALI.py --data_source /path/to/dataset

Superiority:
- Easy to use
- Accelerate data loading
Weakness:
- Occupy video memory
Description:
NVIDIA Data Loading Library (DALI) is a collection of highly optimized building blocks and an execution engine that accelerates the data pipeline for computer vision and audio deep learning applications.
To load dataset using DALI, the following steps needed to be performed:

  1. Config external input iterator:
eii = ExternalInputIterator(data_source=opt.data_source, batch_size=opt.batch_size, shuffle=True)
# A demo of external input iterator
class ExternalInputIterator(object):
    def __init__(self, data_source, batch_size, shuffle):
        self.batch_size = batch_size
        
        img_paths = sorted(glob.glob(data_source + '/train' + '/blurry' + '/*/*.*'))
        gt_paths = sorted(glob.glob(data_source + '/train' + '/sharp' + '/*/*.*'))
        self.paths = list(zip(*(img_paths,gt_paths)))
        if shuffle:
            random.shuffle(self.paths)

    def __iter__(self):
        self.i = 0
        return self

    def __next__(self):
        imgs = []
        gts = []

        if self.i >= len(self.paths):
            self.__iter__()
            raise StopIteration

        for _ in range(self.batch_size):
            img_path, gt_path = self.paths[self.i % len(self.paths)]
            imgs.append(np.fromfile(img_path, dtype = np.uint8))
            gts.append(np.fromfile(gt_path, dtype = np.uint8))
            self.i += 1
        return (imgs, gts)

    def __len__(self):
        return len(self.paths)

    next = __next__
  1. Config pipeline:
pipe = externalSourcePipeline(batch_size=opt.batch_size, num_threads=opt.num_workers, device_id=0, seed=opt.seed, external_data = eii, resize=opt.resize, crop=opt.crop)
# A demo of pipeline
@pipeline_def
def externalSourcePipeline(external_data, resize, crop):
    imgs, gts = fn.external_source(source=external_data, num_outputs=2)
    
    crop_pos = (fn.random.uniform(range=(0., 1.)), fn.random.uniform(range=(0., 1.)))
    flip_p = (fn.random.coin_flip(), fn.random.coin_flip())
    
    imgs = transform(imgs, resize, crop, crop_pos, flip_p)
    gts = transform(gts, resize, crop, crop_pos, flip_p)
    return imgs, gts

def transform(imgs, resize, crop, crop_pos, flip_p):
    imgs = fn.decoders.image(imgs, device='mixed')
    imgs = fn.resize(imgs, resize_y=resize)
    imgs = fn.crop(imgs, crop=(crop,crop), crop_pos_x=crop_pos[0], crop_pos_y=crop_pos[1])
    imgs = fn.flip(imgs, horizontal=flip_p[0], vertical=flip_p[1])
    imgs = fn.transpose(imgs, perm=[2, 0, 1])
    imgs = imgs/127.5-1
    
    return imgs
  1. Instantiate DALIGenericIterator object:
dgi = DALIGenericIterator(pipe, output_map=["imgs", "gts"], last_batch_padded=True, last_batch_policy=LastBatchPolicy.PARTIAL, auto_reset=True)
  1. Read data:
for i, data in enumerate(dgi):
    imgs = data[0]['imgs']
    gts = data[0]['gts']
Parses data out of your Google Takeout (History, Activity, Youtube, Locations, etc...)

google_takeout_parser parses both the Historical HTML and new JSON format for Google Takeouts caches individual takeout results behind cachew merge mu

Sean Breckenridge 27 Dec 28, 2022
This module is used to create Convolutional AutoEncoders for Variational Data Assimilation

VarDACAE This module is used to create Convolutional AutoEncoders for Variational Data Assimilation. A user can define, create and train an AE for Dat

Julian Mack 23 Dec 16, 2022
University Challenge 2021 With Python

University Challenge 2021 This repository contains: The TeX file of the technical write-up describing the University / HYPER Challenge 2021 under late

2 Nov 27, 2021
Demonstrate the breadth and depth of your data science skills by earning all of the Databricks Data Scientist credentials

Data Scientist Learning Plan Demonstrate the breadth and depth of your data science skills by earning all of the Databricks Data Scientist credentials

Trung-Duy Nguyen 27 Nov 01, 2022
For making Tagtog annotation into csv dataset

tagtog_relation_extraction for making Tagtog annotation into csv dataset How to Use On Tagtog 1. Go to Project Downloads 2. Download all documents,

hyeong 4 Dec 28, 2021
INF42 - Topological Data Analysis

TDA INF421(Conception et analyse d'algorithmes) Projet : Topological Data Analysis SphereMin Etant donné un nuage des points, ce programme contient de

2 Jan 07, 2022
Ejercicios Panda usando Pandas

Readme Below we add configuration details to locally test your application To co

1 Jan 22, 2022
MeSH2Matrix - A set of Python codes for the generation of biomedical ontologies from the MeSH keywords of the PubMed scholarly publications

A set of Python codes for the generation of biomedical ontologies from the MeSH keywords of the PubMed scholarly publications

SisonkeBiotik 6 Nov 30, 2022
This is a python script to navigate and extract the FSD50K dataset

FSD50K navigator This is a script I use to navigate the sound dataset from FSK50K.

sweemeng 2 Nov 23, 2021
Codes for the collection and predictive processing of bitcoin from the API of coinmarketcap

Codes for the collection and predictive processing of bitcoin from the API of coinmarketcap

Teo Calvo 5 Apr 26, 2022
PLStream: A Framework for Fast Polarity Labelling of Massive Data Streams

PLStream: A Framework for Fast Polarity Labelling of Massive Data Streams Motivation When dataset freshness is critical, the annotating of high speed

4 Aug 02, 2022
cLoops2: full stack analysis tool for chromatin interactions

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

YaqiangCao 25 Dec 14, 2022
small package with utility functions for analyzing (fly) calcium imaging data

fly2p Tools for analyzing two-photon (2p) imaging data collected with Vidrio Scanimage software and micromanger. Loading scanimage data relies on scan

Hannah Haberkern 3 Dec 14, 2022
A python package which can be pip installed to perform statistics and visualize binomial and gaussian distributions of the dataset

GBiStat package A python package to assist programmers with data analysis. This package could be used to plot : Binomial Distribution of the dataset p

Rishikesh S 4 Oct 17, 2022
Predictive Modeling & Analytics on Home Equity Line of Credit

Predictive Modeling & Analytics on Home Equity Line of Credit Data (Python) HMEQ Data Set In this assignment we will use Python to examine a data set

Dhaval Patel 1 Jan 09, 2022
Very useful and necessary functions that simplify working with data

Additional-function-for-pandas Very useful and necessary functions that simplify working with data random_fill_nan(module_name, nan) - Replaces all sp

Alexander Goldian 2 Dec 02, 2021
Data analysis and visualisation projects from a range of individual projects and applications

Python-Data-Analysis-and-Visualisation-Projects Data analysis and visualisation projects from a range of individual projects and applications. Python

Tom Ritman-Meer 1 Jan 25, 2022
Manage large and heterogeneous data spaces on the file system.

signac - simple data management The signac framework helps users manage and scale file-based workflows, facilitating data reuse, sharing, and reproduc

Glotzer Group 109 Dec 14, 2022
Exploratory Data Analysis of the 2019 Indian General Elections using a dataset from Kaggle.

2019-indian-election-eda Exploratory Data Analysis of the 2019 Indian General Elections using a dataset from Kaggle. This project is a part of the Cou

Souradeep Banerjee 5 Oct 10, 2022
Data pipelines built with polars

valves Warning: the project is very much work in progress. Valves is a collection of functions for your data .pipe()-lines. This project aimes to host

14 Jan 03, 2023