DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Last update: Dec 09, 2022

Related tags

Deep Learning DCSAU-Net

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

By Qing Xu, Wenting Duan and Na He

Requirements

pytorch==1.10.0
pytorch-lightning==1.1.0
albumentations==0.3.2
seaborn
sklearn

Dataset

To apply the model on a custom dataset, the data tree should be constructed as:

    ├── data
          ├── images
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png
          ├── masks
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png

CSV generation

python data_split_csv.py --dataset your/data/path --size 0.9

Train

python train.py --dataset your/data/path --csvfile your/csv/path --loss dice --batch 16 --lr 0.001 --epoch 150

Evaluation

python eval_binary.py --dataset your/data/path --csvfile your/csv/path --model save_models/epoch_last.pth --debug True

Acknowledgement

The codes are modified from ResNeSt, U-Net

Owner

Qing Xu

GitHub Repository

Rank1 Conversation Emotion Detection Task

Rank1-Conversation_Emotion_Detection_Task accuracy macro-f1 recall 0.826 0.7544 0.719 基于预训练模型和时序预测模型的对话情感探测任务 1 摘要针对对话情感探测任务，本文将其分为文本分类和时间序列预测两个子任务，分

2 Nov 28, 2021

Official implementation of our paper "Learning to Bootstrap for Combating Label Noise"

Learning to Bootstrap for Combating Label Noise This repo is the official implementation of our paper "Learning to Bootstrap for Combating Label Noise

21 Apr 09, 2022

Variational autoencoder for anime face reconstruction

VAE animeface Variational autoencoder for anime face reconstruction Introduction This repository is an exploratory example to train a variational auto

2 Dec 11, 2021

This repository contains a set of codes to run (i.e., train, perform inference with, evaluate) a diarization method called EEND-vector-clustering.

EEND-vector clustering The EEND-vector clustering (End-to-End-Neural-Diarization-vector clustering) is a speaker diarization framework that integrates

45 Dec 26, 2022

Simulation environments for the CrazyFlie quadrotor: Used for Reinforcement Learning and Sim-to-Real Transfer

Phoenix-Drone-Simulation An OpenAI Gym environment based on PyBullet for learning to control the CrazyFlie quadrotor: Can be used for Reinforcement Le

8 Dec 07, 2022

GDR-Net: Geometry-Guided Direct Regression Network for Monocular 6D Object Pose Estimation. (CVPR 2021)

GDR-Net This repo provides the PyTorch implementation of the work: Gu Wang, Fabian Manhardt, Federico Tombari, Xiangyang Ji. GDR-Net: Geometry-Guided

169 Jan 07, 2023

CVPR 2021: "Generating Diverse Structure for Image Inpainting With Hierarchical VQ-VAE"

Diverse Structure Inpainting ArXiv | Papar | Supplementary Material | BibTex This repository is for the CVPR 2021 paper, "Generating Diverse Structure

152 Nov 04, 2022

TensorFlow-based neural network library

Sonnet Documentation | Examples Sonnet is a library built on top of TensorFlow 2 designed to provide simple, composable abstractions for machine learn

9.5k Jan 07, 2023

LTR_CrossEncoder: Legal Text Retrieval Zalo AI Challenge 2021

LTR_CrossEncoder: Legal Text Retrieval Zalo AI Challenge 2021 We propose a cross encoder model (LTR_CrossEncoder) for information retrieval, re-retrie

7 Jan 12, 2022

Inferring Lexicographically-Ordered Rewards from Preferences

Inferring Lexicographically-Ordered Rewards from Preferences Code author: Alihan Hüyük ([e

1 Feb 13, 2022

PyTorch implementation of our ICCV paper DeFRCN: Decoupled Faster R-CNN for Few-Shot Object Detection.

Introduction This repo contains the official PyTorch implementation of our ICCV paper DeFRCN: Decoupled Faster R-CNN for Few-Shot Object Detection. Up

133 Dec 29, 2022

A PyTorch Implementation of the paper - Choi, Woosung, et al. "Investigating u-nets with various intermediate blocks for spectrogram-based singing voice separation." 21th International Society for Music Information Retrieval Conference, ISMIR. 2020.

Investigating U-NETS With Various Intermediate Blocks For Spectrogram-based Singing Voice Separation A Pytorch Implementation of the paper "Investigat

63 Nov 14, 2022

This is the official pytorch implementation of AutoDebias, an automatic debiasing method for recommendation.

AutoDebias This is the official pytorch implementation of AutoDebias, a debiasing method for recommendation system. AutoDebias is proposed in the pape

77 Nov 25, 2022

Code for A Volumetric Transformer for Accurate 3D Tumor Segmentation

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

114 Dec 20, 2022

BuildingNet: Learning to Label 3D Buildings

BuildingNet This is the implementation of the BuildingNet architecture described in this paper: Paper: BuildingNet: Learning to Label 3D Buildings Arx

16 Nov 07, 2022

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

285 Jan 04, 2023

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Related tags

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Requirements

Dataset

CSV generation

Train

Evaluation

Acknowledgement

Owner

Qing Xu

Rank1 Conversation Emotion Detection Task

Official implementation of our paper "Learning to Bootstrap for Combating Label Noise"

Variational autoencoder for anime face reconstruction

This repository contains a set of codes to run (i.e., train, perform inference with, evaluate) a diarization method called EEND-vector-clustering.

Simulation environments for the CrazyFlie quadrotor: Used for Reinforcement Learning and Sim-to-Real Transfer

GDR-Net: Geometry-Guided Direct Regression Network for Monocular 6D Object Pose Estimation. (CVPR 2021)

CVPR 2021: "Generating Diverse Structure for Image Inpainting With Hierarchical VQ-VAE"

TensorFlow-based neural network library

LTR_CrossEncoder: Legal Text Retrieval Zalo AI Challenge 2021

Inferring Lexicographically-Ordered Rewards from Preferences

PyTorch implementation of our ICCV paper DeFRCN: Decoupled Faster R-CNN for Few-Shot Object Detection.

A PyTorch Implementation of the paper - Choi, Woosung, et al. "Investigating u-nets with various intermediate blocks for spectrogram-based singing voice separation." 21th International Society for Music Information Retrieval Conference, ISMIR. 2020.

This is the official pytorch implementation of AutoDebias, an automatic debiasing method for recommendation.

Code for A Volumetric Transformer for Accurate 3D Tumor Segmentation

BuildingNet: Learning to Label 3D Buildings

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

Code for the Shortformer model, from the paper by Ofir Press, Noah A. Smith and Mike Lewis.

A modification of Daniel Russell's notebook merged with Katherine Crowson's hq-skip-net changes

Research code for Arxiv paper "Camera Motion Agnostic 3D Human Pose Estimation"

Privacy-Preserving Machine Learning (PPML) Tutorial Presented at PyConDE 2022