Transformer model implemented with Pytorch

Overview

transformer-pytorch

Transformer model implemented with Pytorch

Attention is all you need-[Paper]

Architecture

Transformer


Self-Attention

Attention

self_attention.py

[N, len, heads, head_dim] values = values.reshape(N, value_len, self.heads, self.head_dim) keys = keys.reshape(N, key_len, self.heads, self.head_dim) queries = queries.reshape(N, query_len, self.heads, self.head_dim) # Einsum does matrix mult. for query*keys for each training example # with every other training example, don't be confused by einsum # it's just how I like doing matrix multiplication & bmm energy = torch.einsum("nqhd,nkhd->nhqk", [queries, keys]) # queries shape: (N, query_len, heads, heads_dim), # keys shape: (N, key_len, heads, heads_dim) # energy: (N, heads, query_len, key_len) # Mask padded indices so their weights become 0 if mask is not None: energy = energy.masked_fill(mask == 0, float("-1e20")) # Normalize energy values similarly to seq2seq + attention # so that they sum to 1. Also divide by scaling factor for # better stability attention = torch.softmax(energy / (self.embed_size ** (1 / 2)), dim=3) # attention shape: (N, heads, query_len, key_len) out = torch.einsum("nhql,nlhd->nqhd", [attention, values]).reshape( N, query_len, self.heads * self.head_dim ) # attention shape: (N, heads, query_len, key_len) # values shape: (N, value_len, heads, heads_dim) # out after matrix multiply: (N, query_len, heads, head_dim), then # we reshape and flatten the last two dimensions. out = self.fc_out(out) # Linear layer doesn't modify the shape, final shape will be # (N, query_len, embed_size) return out ">
 class SelfAttention(nn.Module):
    def __init__(self, embed_size, heads):
        super(SelfAttention, self).__init__()
        self.embed_size = embed_size
        self.heads      = heads
        self.head_dim   = embed_size // heads

        assert (
                self.head_dim * heads == embed_size
        ), "Embedding size needs to be divisible by heads"

        self.values  = nn.Linear(self.embed_size, self.embed_size, bias=False)
        self.keys    = nn.Linear(self.embed_size, self.embed_size, bias=False)
        self.queries = nn.Linear(self.embed_size, self.embed_size, bias=False)
        self.fc_out  = nn.Linear(heads * self.head_dim, embed_size)

    def forward(self, values, keys, query, mask):
        # Get number of training examples
        N = query.shape[0]

        value_len, key_len, query_len = values.shape[1], keys.shape[1], query.shape[1]

        values  = self.values(values)
        keys    = self.keys(keys)
        queries = self.queries(query)
        
        # Split the embedding into self.heads different pieces
        # Multi head
        # [N, len, embed_size] --> [N, len, heads, head_dim]
        values    = values.reshape(N, value_len, self.heads, self.head_dim)
        keys      = keys.reshape(N, key_len, self.heads, self.head_dim)
        queries   = queries.reshape(N, query_len, self.heads, self.head_dim)

        # Einsum does matrix mult. for query*keys for each training example
        # with every other training example, don't be confused by einsum
        # it's just how I like doing matrix multiplication & bmm
        energy = torch.einsum("nqhd,nkhd->nhqk", [queries, keys])
        # queries shape: (N, query_len, heads, heads_dim),
        # keys shape: (N, key_len, heads, heads_dim)
        # energy: (N, heads, query_len, key_len)

        # Mask padded indices so their weights become 0
        if mask is not None:
            energy = energy.masked_fill(mask == 0, float("-1e20"))

        # Normalize energy values similarly to seq2seq + attention
        # so that they sum to 1. Also divide by scaling factor for
        # better stability
        attention = torch.softmax(energy / (self.embed_size ** (1 / 2)), dim=3)
        # attention shape: (N, heads, query_len, key_len)

        out = torch.einsum("nhql,nlhd->nqhd", [attention, values]).reshape(
            N, query_len, self.heads * self.head_dim
        )
        # attention shape: (N, heads, query_len, key_len)
        # values shape: (N, value_len, heads, heads_dim)
        # out after matrix multiply: (N, query_len, heads, head_dim), then
        # we reshape and flatten the last two dimensions.

        out = self.fc_out(out)
        # Linear layer doesn't modify the shape, final shape will be
        # (N, query_len, embed_size)

        return out

Encoder Block

Encoder

encoder_block.py

class EncoderBlock(nn.Module):
    def __init__(self, embed_size, heads, dropout, forward_expansion):
        super(EncoderBlock, self).__init__()
        self.attention = SelfAttention(embed_size, heads)
        self.norm1     = nn.LayerNorm(embed_size)
        self.norm2     = nn.LayerNorm(embed_size)

        self.feed_forward = nn.Sequential(
            nn.Linear(embed_size, forward_expansion * embed_size),
            nn.ReLU(),
            nn.Linear(forward_expansion * embed_size, embed_size),
        )

        self.dropout = nn.Dropout(dropout)

    def forward(self, value, key, query, mask):
        attention = self.attention(value, key, query, mask)

        # Add skip connection, run through normalization and finally dropout
        x       = self.dropout(self.norm1(attention + query))
        forward = self.feed_forward(x)
        out     = self.dropout(self.norm2(forward + x))
        return out

Encoder

Encoder

encoder.py

class Encoder(nn.Module):
    def __init__(
            self,
            src_vocab_size,
            embed_size,
            num_layers,
            heads,
            device,
            forward_expansion,
            dropout,
            max_length,
    ):

        super(Encoder, self).__init__()
        self.embed_size         = embed_size
        self.device             = device
        self.word_embedding     = nn.Embedding(src_vocab_size, embed_size)
        self.position_embedding = nn.Embedding(max_length, embed_size)

        self.layers = nn.ModuleList(
            [
                EncoderBlock(
                    embed_size,
                    heads,
                    dropout=dropout,
                    forward_expansion=forward_expansion,
                )
                for _ in range(num_layers)
            ]
        )

        self.dropout = nn.Dropout(dropout)

    def forward(self, x, mask):
        N, seq_length = x.shape
        positions = torch.arange(0, seq_length).expand(N, seq_length).to(self.device)
        out = self.dropout(
            (self.word_embedding(x) + self.position_embedding(positions))
        )

        # In the Encoder the query, key, value are all the same, it's in the
        # decoder this will change. This might look a bit odd in this case.
        for layer in self.layers:
            out = layer(out, out, out, mask)

        return out

Decoder Block

DecoderBlock

docoder_block.py

class DecoderBlock(nn.Module):
    def __init__(self, embed_size, heads, forward_expansion, dropout, device):
        super(DecoderBlock, self).__init__()
        self.norm              = nn.LayerNorm(embed_size)
        self.attention         = SelfAttention(embed_size, heads=heads)
        self.transformer_block = EncoderBlock(
            embed_size, heads, dropout, forward_expansion
        )
        self.dropout           = nn.Dropout(dropout)

    def forward(self, x, value, key, src_mask, trg_mask):
        attention = self.attention(x, x, x, trg_mask)
        query     = self.dropout(self.norm(attention + x))
        out       = self.transformer_block(value, key, query, src_mask)
        return out

Decoder

Decoder

decoder.py

class Decoder(nn.Module):
    def __init__(
            self,
            trg_vocab_size,
            embed_size,
            num_layers,
            heads,
            forward_expansion,
            dropout,
            device,
            max_length,
    ):
        super(Decoder, self).__init__()
        self.device             = device
        self.word_embedding     = nn.Embedding(trg_vocab_size, embed_size)
        self.position_embedding = nn.Embedding(max_length, embed_size)

        self.layers = nn.ModuleList(
            [
                DecoderBlock(embed_size, heads, forward_expansion, dropout, device)
                for _ in range(num_layers)
            ]
        )
        
        self.dropout = nn.Dropout(dropout)
        self.fc_out  = nn.Linear(embed_size, trg_vocab_size)


    def forward(self, x, enc_out, src_mask, trg_mask):
        N, seq_length = x.shape
        positions     = torch.arange(0, seq_length).expand(N, seq_length).to(self.device)
        x             = self.dropout(
            (self.word_embedding(x) + self.position_embedding(positions))
        )

        for layer in self.layers:
            x = layer(x, enc_out, enc_out, src_mask, trg_mask)

        out = self.fc_out(x)
        return out

Transformer

transformer.py

class Transformer(nn.Module):
    def __init__(
            self,
            src_vocab_size,
            trg_vocab_size,
            src_pad_idx,
            trg_pad_idx,
            embed_size=512,
            num_layers=6,
            forward_expansion=4,
            heads=8,
            dropout=0,
            device="cpu",
            max_length=100,
    ):

        super(Transformer, self).__init__()

        self.encoder = Encoder(
            src_vocab_size,
            embed_size,
            num_layers,
            heads,
            device,
            forward_expansion,
            dropout,
            max_length,
        )

        self.decoder = Decoder(
            trg_vocab_size,
            embed_size,
            num_layers,
            heads,
            forward_expansion,
            dropout,
            device,
            max_length,
        )

        self.src_pad_idx = src_pad_idx
        self.trg_pad_idx = trg_pad_idx
        self.device      = device

    def make_src_mask(self, src):
        src_mask = (src != self.src_pad_idx).unsqueeze(1).unsqueeze(2)
        # (N, 1, 1, src_len)
        return src_mask.to(self.device)

    def make_trg_mask(self, trg):
        N, trg_len = trg.shape
        trg_mask = torch.tril(torch.ones((trg_len, trg_len))).expand(
            N, 1, trg_len, trg_len
        )

        return trg_mask.to(self.device)

    def forward(self, src, trg):
        src_mask = self.make_src_mask(src)
        trg_mask = self.make_trg_mask(trg)
        enc_src = self.encoder(src, src_mask)
        out = self.decoder(trg, enc_src, src_mask, trg_mask)
        return out

Authors

Owner
Mingu Kang
SW Engineering / ML / DL / Blockchain Dept. of Software Engineering, Jeonbuk National University
Mingu Kang
VSR-Transformer - This paper proposes a new Transformer for video super-resolution (called VSR-Transformer).

VSR-Transformer By Jiezhang Cao, Yawei Li, Kai Zhang, Luc Van Gool This paper proposes a new Transformer for video super-resolution (called VSR-Transf

Jiezhang Cao 225 Nov 13, 2022
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Enformer - Pytorch (wip) Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch. The original tensorflow

Phil Wang 235 Dec 27, 2022
Multi-task Learning of Order-Consistent Causal Graphs (NeuRIPs 2021)

Multi-task Learning of Order-Consistent Causal Graphs (NeuRIPs 2021) Authors: Xinshi Chen, Haoran Sun, Caleb Ellington, Eric Xing, Le Song Link to pap

Xinshi Chen 2 Dec 20, 2021
PyTorch implementation of federated learning framework based on the acceleration of global momentum

Federated Learning with Acceleration of Global Momentum PyTorch implementation of federated learning framework based on the acceleration of global mom

0 Dec 23, 2021
Time Dependent DFT in Tamm-Dancoff Approximation

Density Function Theory Program - kspy-tddft(tda) This is an implementation of Time-Dependent Density Functional Theory(TDDFT) using the Tamm-Dancoff

Peter Borthwick 2 Nov 17, 2022
A production-ready, scalable Indexer for the Jina neural search framework, based on HNSW and PSQL

🌟 HNSW + PostgreSQL Indexer HNSWPostgreSQLIndexer Jina is a production-ready, scalable Indexer for the Jina neural search framework. It combines the

Jina AI 25 Oct 14, 2022
Companion repo of the UCC 2021 paper "Predictive Auto-scaling with OpenStack Monasca"

Predictive Auto-scaling with OpenStack Monasca Giacomo Lanciano*, Filippo Galli, Tommaso Cucinotta, Davide Bacciu, Andrea Passarella 2021 IEEE/ACM 14t

Giacomo Lanciano 0 Dec 07, 2022
Training deep models using anime, illustration images.

animeface deep models for anime images. Datasets anime-face-dataset Anime faces collected from Getchu.com. Based on Mckinsey666's dataset. 63.6K image

Tomoya Sawada 61 Dec 25, 2022
Laplacian Score-regularized Concrete Autoencoders

Laplacian Score-regularized Concrete Autoencoders Requirements: torch = 1.9 scikit-learn = 0.24 omegaconf = 2.0.6 scipy = 1.6.0 matplotlib How to

JS 6 Dec 07, 2022
Ensembling Off-the-shelf Models for GAN Training

Vision-aided GAN video (3m) | website | paper Can the collective knowledge from a large bank of pretrained vision models be leveraged to improve GAN t

345 Dec 28, 2022
Negative Sample is Negative in Its Own Way: Tailoring Negative Sentences forImage-Text Retrieval

NSGDC Some codes in this repo are copied/modified from opensource implementations made available by UNITER, PyTorch, HuggingFace, OpenNMT, and Nvidia.

Zhihao Fan 2 Nov 07, 2022
Detector for Log4Shell exploitation attempts

log4shell-detector Detector for Log4Shell exploitation attempts Idea The problem with the log4j CVE-2021-44228 exploitation is that the string can be

Florian Roth 729 Dec 25, 2022
Code for Subgraph Federated Learning with Missing Neighbor Generation (NeurIPS 2021)

To run the code Unzip the package to your local directory; Run 'pip install -r requirements.txt' to download required packages; Open file ~/nips_code/

32 Dec 26, 2022
Official PyTorch code for WACV 2022 paper "CFLOW-AD: Real-Time Unsupervised Anomaly Detection with Localization via Conditional Normalizing Flows"

CFLOW-AD: Real-Time Unsupervised Anomaly Detection with Localization via Conditional Normalizing Flows WACV 2022 preprint:https://arxiv.org/abs/2107.1

Denis 156 Dec 28, 2022
Test-Time Personalization with a Transformer for Human Pose Estimation, NeurIPS 2021

Transforming Self-Supervision in Test Time for Personalizing Human Pose Estimation This is an official implementation of the NeurIPS 2021 paper: Trans

41 Nov 28, 2022
Source code for EquiDock: Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking (ICLR 2022)

Source code for EquiDock: Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking (ICLR 2022) Please cite "Independent SE(3)-Equivar

Octavian Ganea 154 Jan 02, 2023
Sky Computing: Accelerating Geo-distributed Computing in Federated Learning

Sky Computing Introduction Sky Computing is a load-balanced framework for federated learning model parallelism. It adaptively allocate model layers to

HPC-AI Tech 72 Dec 27, 2022
Architecture Patterns with Python (TDD, DDD, EDM)

architecture-traning Architecture Patterns with Python (TDD, DDD, EDM) Chapter 5. 높은 기어비와 낮은 기어비의 TDD 5.2 도메인 계층 테스트를 서비스 계층으로 옮겨야 하는가? 도메인 계층 테스트 def

minsung sim 2 Mar 04, 2022
Barlow Twins and HSIC

Barlow Twins and HSIC Unofficial Pytorch implementation for Barlow Twins and HSIC_SSL on small datasets (CIFAR10, STL10, and Tiny ImageNet). Correspon

Yao-Hung Hubert Tsai 49 Nov 24, 2022
YOLOPのPythonでのONNX推論サンプル

YOLOP-ONNX-Video-Inference-Sample YOLOPのPythonでのONNX推論サンプルです。 ONNXモデルは、hustvl/YOLOP/weights を使用しています。 Requirement OpenCV 3.4.2 or later onnxruntime 1.

KazuhitoTakahashi 8 Sep 05, 2022