Although the TCGA database has 33 cancers

We've been talking about downloading TCGA Of 33 Total data for cancer , Especially the expression matrix and clinical phenotype information , Here we recommend ucsc Of xena Download it ：https://xenabrowser.net/datapages/

GDC TCGA Acute Myeloid Leukemia (LAML) (15 datasets)
GDC TCGA Adrenocortical Cancer (ACC) (14 datasets)
GDC TCGA Bile Duct Cancer (CHOL) (14 datasets)
GDC TCGA Bladder Cancer (BLCA) (14 datasets)
GDC TCGA Breast Cancer (BRCA) (20 datasets)
GDC TCGA Cervical Cancer (CESC) (14 datasets)
GDC TCGA Colon Cancer (COAD) (15 datasets)
GDC TCGA Endometrioid Cancer (UCEC) (15 datasets)
GDC TCGA Esophageal Cancer (ESCA) (14 datasets)
GDC TCGA Glioblastoma (GBM) (15 datasets)
GDC TCGA Head and Neck Cancer (HNSC) (14 datasets)
GDC TCGA Kidney Chromophobe (KICH) (14 datasets)
GDC TCGA Kidney Clear Cell Carcinoma (KIRC) (15 datasets)
GDC TCGA Kidney Papillary Cell Carcinoma (KIRP) (15 datasets)
GDC TCGA Large B-cell Lymphoma (DLBC) (14 datasets)
GDC TCGA Liver Cancer (LIHC) (14 datasets)
GDC TCGA Lower Grade Glioma (LGG) (14 datasets)
GDC TCGA Lung Adenocarcinoma (LUAD) (15 datasets)
GDC TCGA Lung Squamous Cell Carcinoma (LUSC) (15 datasets)
GDC TCGA Melanoma (SKCM) (14 datasets)
GDC TCGA Mesothelioma (MESO) (14 datasets)
GDC TCGA Ocular melanomas (UVM) (14 datasets)
GDC TCGA Ovarian Cancer (OV) (15 datasets)
GDC TCGA Pancreatic Cancer (PAAD) (14 datasets)
GDC TCGA Pheochromocytoma & Paraganglioma (PCPG) (14 datasets)
GDC TCGA Prostate Cancer (PRAD) (14 datasets)
GDC TCGA Rectal Cancer (READ) (15 datasets)
GDC TCGA Sarcoma (SARC) (14 datasets)
GDC TCGA Stomach Cancer (STAD) (15 datasets)
GDC TCGA Testicular Cancer (TGCT) (14 datasets)
GDC TCGA Thymoma (THYM) (14 datasets)
GDC TCGA Thyroid Cancer (THCA) (14 datasets)
GDC TCGA Uterine Carcinosarcoma (UCS) (14 datasets)

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In fact, not every cancer has good data , If you use a simple standard , For example, greater than 150 Cancer samples , After filtering, there is nothing left 22 Kinds of cancer . reference ：《Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types》, As shown below ：

22 Kinds of cancer

this 22 Cancer can be divided into 9 Categories ：

• lung (lung adenocarcinoma, LUAD; lung squamous cell carcinoma, LUSC),
• digestive system (colon adenocarcinoma, COAD; esophageal carcinoma, ESCA; liver hepatocellular carcinoma, LIHC; pancre- atic adenocarcinoma, PAAD; stomach adenocarcinoma, STAD),
• endocrine system (pheochromocytoma and para- ganglioma, PCPG; thyroid carcinoma, THCA),
• skin (skin cutaneous melanoma, SKCM),
• brain (brain lower grade glioma, LGG),
• reproductive system (breast invasive carci- noma, BRCA; cervical squamous cell carcinoma and endo- cervical adenocarcinoma, CESC; ovarian serous cystade- nocarcinoma, OV; prostate adenocarcinoma, PRAD; tes- ticular germ cell tumors, TGCT; uterine corpus endome- trial carcinoma, UCEC),
• urinary system (bladder urothe- lial carcinoma, BLCA; kidney renal clear cell carcinoma, KIRC; kidney renal papillary cell carcinoma, KIRP),
• head and neck (head and neck squamous carcinoma, HNSC)
• soft tissue (sarcoma, SARC).

In this case , It is convenient for us to discuss by categories , Digestive and reproductive cancers are certainly very different , It is also necessary to take apart the comparison notes after mixed discussion .