Liftover for genome coordinate conversion

Liftover yes UCSC A tool used to convert between genome versions , It can transform the genome version of a species , It can also convert genome versions between species .

1 Web page conversion

http://genome.ucsc.edu/cgi-bin/hgLiftOver
 

2. linux Run locally

###  Download a software 
wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver

###  Download related files （hg38 and hg19 Coordinate transformation ）
wget http://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/hg19ToHg38.over.chain.gz 
wget http://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz

###  Perform conversion 
liftOver access-5k-mappable.hg19.bed hg19ToHg38.over.chain.gz access-5k-mappable.hg38.bed unMapped.txt

# access-5k-mappable.hg19.bed  What needs to be transformed bed
# access-5k-mappable.hg38.bed  Transformed bed